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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100980139_100982729_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
100980139 - 100982729
Intron Length:
2591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
RDPDNVNSPVRYSIVQGIHL
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
72.5
39.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
90.9
0.92
0.8
88.3
28.9
Minor 5ss
40.5
-1.1
2.9
54
43.2
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
CDH19
Ensembl Gene ID:
ENSAPLG00000008016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008346
100895953 - 101002820
106868