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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_100996863_101002329_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
100996863 - 101002329
Intron Length:
5467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
AATTTGTTATTT
Flanking Amino Acid:
AVLACILIFLVFFLAIIAIR
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.9
0.67
1
80.5
36.8
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
48.8
-0
2.2
70.76
40.7

Associated Gene:

Gene:
CDH19
Ensembl Gene ID:
ENSAPLG00000008016
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008346
100895953 - 101002820
106868