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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101025310_101038908_F

Intron Information:

Intron Rank:
134211
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
101025310 - 101038908
Intron Length:
13599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATTATTA
5'SS Class:
weak_major
3'SS Sequence:
ATCTTTTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TATCTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1
65
34.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.8
0.51
0.9
67.5
38.4
Minor 5ss
47.8
-0.2
2.8
61.9
44.7
Minor BPS
59.2
0.37
1.7
77.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017183
101024902 - 101063234
38333