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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101038995_101039117_F

Intron Information:

Intron Rank:
134214
Intron Class:
major
Intron Phase:
Intron Coordinates:
101038995 - 101039117
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.7
77.7
31
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
52.6
0.16
1.9
77.75
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045793
101038721 - 101039282
562