About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101043144_101062209_F

Intron Information:

Intron Rank:
134213
Intron Class:
major
Intron Phase:
Intron Coordinates:
101043144 - 101062209
Intron Length:
19066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACCT
5'SS Class:
major
3'SS Sequence:
CATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTTAATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
69
41.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
40.1
-1.1
3.2
58.2
45.9
Minor BPS
50.5
0.09
2
75.23
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017183
101024902 - 101063234
38333