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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101106915_101114395_R

Intron Information:

Intron Rank:
142950
Intron Class:
major
Intron Phase:
Intron Coordinates:
101106915 - 101114395
Intron Length:
7481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
CTCCCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
55.9
0.15
1.2
49
38
Major PPT
84.3
0.77
0.7
78.7
27
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
56.1
0.19
1.7
64.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024242
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024151
101105026 - 101114397
9372