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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101232020_101237665_F

Intron Information:

Intron Rank:
150717
Intron Class:
major
Intron Phase:
Intron Coordinates:
101232020 - 101237665
Intron Length:
5646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCCAG
5'SS Class:
major
3'SS Sequence:
CTGTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TTTTCCAGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
52.8
45.8
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
82
0.72
0.8
80.4
31.6
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
51.8
0.14
2.2
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039139
101222059 - 101238282
16224