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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101321685_101329117_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101321685 - 101329117
Intron Length:
7433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATTGCTAAAACT
Flanking Amino Acid:
AILACVLTLLVLVLLIVTMR
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
83.3
0.75
0.9
74.5
40
Minor 5ss
39.7
-1.2
3.1
51.1
45.2
Minor BPS
49.8
0.06
2
74.84
42.2

Associated Gene:

Gene:
CDH7
Ensembl Gene ID:
ENSAPLG00000006282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006551
101321191 - 101405532
84342