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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101330075_101331826_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101330075 - 101331826
Intron Length:
1752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATAAC
5'SS Class:
major
3'SS Sequence:
TATACATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTTCTATACAT
Flanking Amino Acid:
NHNFTLQDNKGDVSPYLSGA
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.7
35.6
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72.4
0.5
0.9
63.2
42.7
Minor 5ss
34
-1.8
3.1
44.4
43.7
Minor BPS
55.8
0.26
2
82.07
39.2

Associated Gene:

Gene:
CDH7
Ensembl Gene ID:
ENSAPLG00000006282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036702
101329118 - 101398468
69351