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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101331945_101333455_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101331945 - 101333455
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATATAACG
Flanking Amino Acid:
TVCENAQPGQVIQKISAIDK
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.9
0.74
0.9
76.6
37.2
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
53.6
-0
1.9
67.09
40.1

Associated Gene:

Gene:
CDH7
Ensembl Gene ID:
ENSAPLG00000006282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036702
101329118 - 101398468
69351
ENSAPLT00000006551
101321191 - 101405532
84342