About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101339659_101343994_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101339659 - 101343994
Intron Length:
4336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
HDPDASNSPVRYSIDRNTDL
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
100
1.24
0.5
100
0
Major PPT
70.1
0.45
0.9
63.3
37.9
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
CDH7
Ensembl Gene ID:
ENSAPLG00000006282
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036702
101329118 - 101398468
69351
ENSAPLT00000006551
101321191 - 101405532
84342