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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101418824_101425919_F

Intron Information:

Intron Rank:
139173
Intron Class:
major
Intron Phase:
Intron Coordinates:
101418824 - 101425919
Intron Length:
7096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATTAT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAACTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
71.7
33.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
47.4
-0.2
2.7
63.2
43.8
Minor BPS
65.8
0.49
1.2
71.45
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023920
101418564 - 101428320
9757