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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101426048_101426393_F

Intron Information:

Intron Rank:
139174
Intron Class:
major
Intron Phase:
Intron Coordinates:
101426048 - 101426393
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACTGACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
77.2
0.61
0.9
73.4
35.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
49.8
-0
2
70.94
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023920
101418564 - 101428320
9757