About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101426671_101428234_F

Intron Information:

Intron Rank:
139175
Intron Class:
major
Intron Phase:
Intron Coordinates:
101426671 - 101428234
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACAACAC
5'SS Class:
major
3'SS Sequence:
TTCTCTACTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
ACATTCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.9
0.26
1.1
50.4
40.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
71.5
0.48
1
72.6
31
Minor 5ss
30.1
-2.3
3.3
33.1
42.2
Minor BPS
62
0.46
1.7
75.69
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024901
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023920
101418564 - 101428320
9757