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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101617346_101618625_F

Intron Information:

Intron Rank:
147110
Intron Class:
major
Intron Phase:
Intron Coordinates:
101617346 - 101618625
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
ATGTCTTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
88
0.85
0.8
80.5
36.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
49.9
0.08
1.8
70.01
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022089
101616376 - 101620179
3804