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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101618794_101620106_F

Intron Information:

Intron Rank:
147111
Intron Class:
major
Intron Phase:
Intron Coordinates:
101618794 - 101620106
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TAGTCCTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.7
0.65
0.9
72.2
37.3
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
60.8
0.34
1.8
69.9
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022089
101616376 - 101620179
3804