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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_101757196_101776001_R

Intron Information:

Intron Rank:
155470
Intron Class:
major
Intron Phase:
Intron Coordinates:
101757196 - 101776001
Intron Length:
18806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
ATGACCTAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
51.4
0.12
2
70.84
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031137
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040761
101753937 - 101776649
22713