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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102021091_102029182_F

Intron Information:

Intron Rank:
136453
Intron Class:
major
Intron Phase:
Intron Coordinates:
102021091 - 102029182
Intron Length:
8092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAC
U12 Branch Point Sequence:
TACTACTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
71.4
0.53
1.2
63.4
44
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
47.5
-0.1
2
66.96
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023519
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045861
102020602 - 102030495
9894
ENSAPLT00000037617
102020602 - 102029792
9191
ENSAPLT00000022539
102020602 - 102040239
19638