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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102029289_102030109_F

Intron Information:

Intron Rank:
136457
Intron Class:
major
Intron Phase:
Intron Coordinates:
102029289 - 102030109
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GGTTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
52.2
0.15
1.7
70.12
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023519
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045861
102020602 - 102030495
9894