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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102359017_102361837_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102359017 - 102361837
Intron Length:
2821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTAAAC
Flanking Amino Acid:
IKDGKAKLPLGTLSKSEWEA
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78
0.63
0.8
70
36.5
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
66.3
0.49
1.8
79.33
36

Associated Gene:

Gene:
RNMT
Ensembl Gene ID:
ENSAPLG00000006690
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006947
102357167 - 102372702
15536