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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102361940_102363951_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102361940 - 102363951
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCGCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATTAATATTT
Flanking Amino Acid:
MLLRRMQALEPYSTSDDSRL
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.8
0.4
1
62.5
44.3
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
44.5
-0.3
2
64.02
40.1

Associated Gene:

Gene:
RNMT
Ensembl Gene ID:
ENSAPLG00000006690
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006947
102357167 - 102372702
15536