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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102369272_102370728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102369272 - 102370728
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCTCTCATGT
Flanking Amino Acid:
FNNWTKSVLIGEFIDRVRRK
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.4
0.62
0.9
69.5
41.3
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
45.5
-0.2
2
64.89
45.6

Associated Gene:

Gene:
RNMT
Ensembl Gene ID:
ENSAPLG00000006690
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006947
102357167 - 102372702
15536