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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102370862_102372525_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102370862 - 102372525
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCATTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTCCCCTCATTT
Flanking Amino Acid:
EQGGEPPKKSSEPGHGQAVA
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
81.6
0.71
0.8
75.7
32.8
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
53.7
0.19
1.8
73.65
43.4

Associated Gene:

Gene:
RNMT
Ensembl Gene ID:
ENSAPLG00000006690
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006947
102357167 - 102372702
15536