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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102387599_102389732_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102387599 - 102389732
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTTTCATTT
Flanking Amino Acid:
WFGSFYYAAMKGVNVVPFLE
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.63
0.9
76.7
31.9
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
47.9
-0
1.7
63.88
41.4

Associated Gene:

Gene:
FAM210A
Ensembl Gene ID:
ENSAPLG00000006893
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007149
102387150 - 102391417
4268