About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102389845_102391150_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102389845 - 102391150
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATGT
Flanking Amino Acid:
NALTAYALYKITTPARYTVT
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.2
0.5
1.1
75.9
38.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
46.5
-0.1
2.2
72.9
44.1

Associated Gene:

Gene:
FAM210A
Ensembl Gene ID:
ENSAPLG00000006893
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007149
102387150 - 102391417
4268