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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_10258207_10284125_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10258207 - 10284125
Intron Length:
25919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
EGYWLPGDEISIKKKNTSKQ
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
ZMYND11
Ensembl Gene ID:
ENSAPLG00000015491
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016210
10240789 - 10301015
60227