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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102709212_102714109_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102709212 - 102714109
Intron Length:
4898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTCTCTTTACA
Flanking Amino Acid:
FYIKHSKYSLKSHHYINMPV
Intron Amino Acid Position:
1875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.9
0.81
0.8
79.9
32.1
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
63.5
0.42
1.6
73.52
37.5

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161