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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102714169_102714625_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102714169 - 102714625
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TATTAAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAAAT
Flanking Amino Acid:
LRNNTFRTHLLTFLTPKEPF
Intron Amino Acid Position:
1856

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.2
0.57
1
67.8
41.9
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
71.5
0.75
1.6
90.38
32.6

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161