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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102715711_102719590_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102715711 - 102719590
Intron Length:
3880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ATTTTTCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTTCCAATA
Flanking Amino Acid:
HKLRFQLCGVGIKTENKTAV
Intron Amino Acid Position:
1774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
78.7
29.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.9
0.56
0.9
71.5
33.7
Minor 5ss
35.7
-1.6
2.9
44
38.6
Minor BPS
49.4
-0
1.8
66.11
34.4

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161