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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102723479_102725313_R

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102723479 - 102725313
Intron Length:
1835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
AATTGTGCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTTTCTTACTC
Flanking Amino Acid:
IYIHCDNGQKFIKVQIQEGN
Intron Amino Acid Position:
1607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.1
65.3
40.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
50.6
0.01
1.2
50.1
42.3
Minor 5ss
33.7
-1.9
3.4
43
38.7
Minor BPS
66
0.48
1.6
73.1
38.8

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161