About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102725420_102728157_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102725420 - 102728157
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
ITPQHGVIEPESRTLILVSP
Intron Amino Acid Position:
1571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76
34.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80
0.68
0.8
81.6
28.8
Minor 5ss
46
-0.4
2.7
58.2
40.5
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161