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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102730251_102733390_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102730251 - 102733390
Intron Length:
3140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAGGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TGGTTCTTGAGT
Flanking Amino Acid:
CGDEISRQQYRPVT*
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.4
61.5
44.7
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
75
0.56
1
72.9
32.3
Minor 5ss
35.2
-1.7
3
42
39.4
Minor BPS
61.2
0.43
1.7
75.02
42.2

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025266
102730237 - 102744064
13828