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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102733506_102733687_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102733506 - 102733687
Intron Length:
182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTTTATCA
Flanking Amino Acid:
NFVLREGTYEVITVTWNPME
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.5
0.8
0.8
86
32.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
66.8
0.53
1.5
75.77
35.6

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025266
102730237 - 102744064
13828