About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102738845_102740958_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102738845 - 102740958
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTTTTAAAG
Flanking Amino Acid:
FFPKTVTSIQSVLKILVLPS
Intron Amino Acid Position:
1194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.5
0.69
1
82.4
32.9
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
67.6
0.41
1.4
69.32
37.9

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025266
102730237 - 102744064
13828
ENSAPLT00000006273
102709073 - 102761233
52161