About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102746629_102748443_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102746629 - 102748443
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
GCTTGTTGAAAT
Flanking Amino Acid:
ILSISVNGEKMDPAKYQCLV
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
48.1
-0
2
66.62
43.9

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161