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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102748593_102750326_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102748593 - 102750326
Intron Length:
1734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTGGACCTAACA
Flanking Amino Acid:
EWDFSVSPGLGYVKVPEELK
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
73.1
0.52
1
75.1
27.3
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
52.5
0.07
2
69.09
43

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161