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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102752378_102753823_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102752378 - 102753823
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTATTTCGAATT
Flanking Amino Acid:
PSDASGTAFSGSEADFTCTS
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
36.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
36.2
-1.6
3.4
43.7
44.2
Minor BPS
48.2
-0
1.7
66.82
37.9

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161