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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102754418_102754672_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
102754418 - 102754672
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGATAAG
5'SS Class:
major
3'SS Sequence:
AGAAATGTCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
ACTCCTTTATCA
Flanking Amino Acid:
LLNDHNEQQERSLFAHQTDN
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
65
41
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
55.5
0.12
1.1
46.1
44.8
Minor 5ss
34.7
-1.7
3.1
41
39.9
Minor BPS
59.4
0.29
1.6
66.92
39.7

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161