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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102757671_102758486_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102757671 - 102758486
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTTTTATAG
Flanking Amino Acid:
EFEKEHRLGQPSFGYHITSP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
91
0.92
0.6
87.6
22.9
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
58.2
0.12
1.7
67.78
40.2

Associated Gene:

Gene:
CEP192
Ensembl Gene ID:
ENSAPLG00000005988
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006273
102709073 - 102761233
52161