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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102778266_102778931_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102778266 - 102778931
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTATATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTTTTTGTATAT
Flanking Amino Acid:
GDDGCVRLWKANYMDNWKCT
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80.3
0.68
0.9
73.9
40.6
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
45.6
-0.2
2.2
69.02
42.2

Associated Gene:

Gene:
SEH1L
Ensembl Gene ID:
ENSAPLG00000005978
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006184
102774796 - 102786669
11874
ENSAPLT00000043661
102776953 - 102786669
9717
ENSAPLT00000042980
102778111 - 102786669
8559