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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102779090_102779398_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102779090 - 102779398
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGAAC
U12 Branch Point Sequence:
TCCTCTTTAACA
Flanking Amino Acid:
DVRIFTLKPLRKELTSSGGL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
59.7
0.24
1.4
69.6
35.5
Major PPT
79.6
0.67
0.8
76.2
31
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
78.9
0.9
1.1
78.6
38.6

Associated Gene:

Gene:
SEH1L
Ensembl Gene ID:
ENSAPLG00000005978
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043661
102776953 - 102786669
9717
ENSAPLT00000006184
102774796 - 102786669
11874