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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102779090_102780573_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102779090 - 102780573
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGAAC
U12 Branch Point Sequence:
TCCTCTTTAACA
Flanking Amino Acid:
VQIYEYNENTRKELTSSGGL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
59.7
0.24
1.4
69.6
35.5
Major PPT
79.6
0.67
0.8
76.2
31
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
78.9
0.9
1.1
78.6
38.6

Associated Gene:

Gene:
SEH1L
Ensembl Gene ID:
ENSAPLG00000005978
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042980
102778111 - 102786669
8559