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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102783160_102784571_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102783160 - 102784571
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TGTTATCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
TTTTTCTAGACT
Flanking Amino Acid:
GDWHCTASWKTHSGSVWRVT
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
78.6
0.64
0.9
70.4
40.9
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
72
0.77
1.6
90.53
33.5

Associated Gene:

Gene:
SEH1L
Ensembl Gene ID:
ENSAPLG00000005978
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042980
102778111 - 102786669
8559
ENSAPLT00000006184
102774796 - 102786669
11874
ENSAPLT00000043661
102776953 - 102786669
9717