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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102807288_102809785_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102807288 - 102809785
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTATTTCTAACG
Flanking Amino Acid:
LGCLLLDNPETVPRGKTLLL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
77.1
31.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
91.3
0.93
0.6
88.5
21
Minor 5ss
34.1
-1.8
3.5
47.4
47.9
Minor BPS
54.7
0.01
1.7
61.32
40.4

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030146
102806544 - 102833593
27050
ENSAPLT00000010880
102806417 - 102844386
37970