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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102810914_102813349_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
102810914 - 102813349
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
TCTTGTCATTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTTATTGAAAT
Flanking Amino Acid:
SLSNLQHMSQACQDVDDSSA
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
68.4
0.41
1.1
72.3
37.2
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
55.7
0.26
1.7
76.38
39.4

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030146
102806544 - 102833593
27050
ENSAPLT00000010880
102806417 - 102844386
37970