Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102814293_102814777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

102814293 - 102814777

Intron Length:

485

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTGTTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

GCAGTGTTAACA

Flanking Amino Acid:

SQCYYAYLTAVCQGATGDVN

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.7

1.08

0.6

12.4

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

75.8

0.58

0.9

73.5

41.9

Minor 5ss

36.2

-1.6

2.9

50.6

45.9

Minor BPS

47.4

-0.2

2.1

55.93

43.3

Associated Gene:

Gene:

TTC39C

Ensembl Gene ID:

ENSAPLG00000010437

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030146

102806544 - 102833593

27050

ENSAPLT00000010880

102806417 - 102844386

37970