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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102821315_102822667_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102821315 - 102822667
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TGTGCTGTAATC
Flanking Amino Acid:
ESKDMKAPLATLALLWYHTV
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.7
0.67
0.8
77.9
36.6
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
51.2
0.02
2.1
66.24
40.3

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030146
102806544 - 102833593
27050
ENSAPLT00000010880
102806417 - 102844386
37970