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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102826100_102826316_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
102826100 - 102826316
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTATTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTATTCCAAACA
Flanking Amino Acid:
ETIKNKIKKNVDGRKSTLSM
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.4
32.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
64.8
0.33
1
59.7
40.7
Minor 5ss
36.2
-1.6
3
46.6
41.5
Minor BPS
49.5
-0
2
65.45
40.6

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030146
102806544 - 102833593
27050
ENSAPLT00000010880
102806417 - 102844386
37970