About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102828023_102833401_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102828023 - 102833401
Intron Length:
5379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTGAC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAA
U12 Branch Point Sequence:
TTTTCTTTACAG
Flanking Amino Acid:
IGILRIRHEMRNHSPLMSFG
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
71.9
33.8
Major BPS
64.3
0.36
1.2
55.7
41.6
Major PPT
89.6
0.89
0.7
84
31
Minor 5ss
33.1
-1.9
3.2
42.9
44.7
Minor BPS
63.6
0.29
1.8
72.3
40.7

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030146
102806544 - 102833593
27050