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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_102828023_102844237_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
102828023 - 102844237
Intron Length:
16215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAGGGGCG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAA
U12 Branch Point Sequence:
TTTTCTTTACAG
Flanking Amino Acid:
RESDRLFKQHRNHSPLMSFG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
55
41.5
Major BPS
64.3
0.36
1.2
55.7
41.6
Major PPT
89.6
0.89
0.7
84
31
Minor 5ss
28.6
-2.5
3.7
38.6
46.6
Minor BPS
63.6
0.29
1.8
72.3
40.7

Associated Gene:

Gene:
TTC39C
Ensembl Gene ID:
ENSAPLG00000010437
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010880
102806417 - 102844386
37970